Publications

Selected publication explicitly acknowledging the DESY HPC infrastructures. It also includes a few publication without explicit acknowledgment (*) , but which have been reported by Maxwell users, which found the cluster particularly essential for their work.

We can only stumble upon such publications, and are grateful for any pointers to papers (send frank.schluenzen_at_desy.de the reference or paper).

To cite or acknowledge the use of the cluster you could add a line like "This research was supported in part through the Maxwell computational resources operated at Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany" to the acknowledgments.

2020 (11)
Title	Authors	Reference	Thumbnail
Photon statistics and signal to noise ratio for incoherent diffraction imaging	Fabian Trost, Kartik Ayyer, Henry Chapman	https://arxiv.org/abs/2005.03389
Getting High: High Fidelity Simulation of High Granularity Calorimeters with High Speed	Erik Buhmann, Sascha Diefenbacher, Engin Eren, Frank Gaede, Gregor Kasieczka, Anatolii Korol, Katja Krüger	https://arxiv.org/abs/2005.05334
Observation of electric-quadrupole infrared transitions in water vapor	Alain Campargue, Samir Kassi, Andrey Yachmenev, Aleksandra A. Kyuberis, Jochen Küpper, and Sergei N. Yurchenko	Phys. Rev. Research 2, 023091
Catalytic cleavage of HEAT and subsequent covalent binding of the tetralone moiety by the SARS-CoV-2 main protease	Sebastian Günther, Patrick Y. A. Reinke, Dominik Oberthuer, et al.	bioRxiv 2020.05.02.043554
Structural control for the coordinated assembly into functional pathogenic type-3 secretion systems	Nikolaus Goessweiner-Mohr, Vadim Kotov, Matthias J. Brunner, Julia Mayr, Jiri Wald, Lucas Kuhlen, Sean Miletic, Oliver Vesper, Wolfgang Lugmayr, Samuel Wagner, Frank DiMaio, Susan Lea, Thomas C. Marlovits	https://doi.org/10.1101/714097
Plasma eyepieces for petawatt class lasers	Ming Zeng, Alberto Martinez de la Ossa, Kristjan Poder, Jens Osterhoff	Physics of Plasmas 27, 023109
The low-barrier methyl internal rotation in the rotational spectrum of 3-methylphenylacetylene	DA Obenchain, P Pinacho, S Zinn, M Schnell	J Molstruc 1213, 128109
Full 3D + 1 modeling of tilted-pulse-front setups for single-cycle terahertz generation	Lu Wang, Tobias Kroh, Nicholas H. Matlis, and Franz Kärtner	JOSAB, Vol. 37(4),1000-1007
Correlated X-ray Ptychography and Fluorescence Nano-Tomography on the Fragmentation Behavior of an Individual Catalyst Particle during the Early Stages of Olefin Polymerization	Koen W. Bossers, Roozbeh Valadian, Silvia Zanoni, Remy Smeets, Nic Friederichs, Jan Garrevoet, Florian Meirer, and Bert M. Weckhuysen	JACS
pinkIndexer – a universal indexer for pink-beam X-ray and electron diffraction snapshots (*)	Gevorkov, Y., Barty, A., Brehm, W., White, T. A., Tolstikova, A., Wiedorn, M. O., Meents, A., Grigat, R.-R., Chapman, H. N. & Yefanov, O.	Acta Cryst. A76.
Ghost imaging at an XUV free-electron laser.	Young Yong Kim, Luca Gelisio, Giuseppe Mercurio, Siarhei Dziarzhytski, Martin Beye, Lars Bocklage, Anton Classen, Christian David, Oleg Yu. Gorobtsov, Ruslan Khubbutdinov, Sergey Lazarev, Nastasia Mukharamova, Yuri N. Obukhov, Benedikt Rösner, Kai Schlage, Ivan A. Zaluzhnyy, Günter Brenner, Ralf Röhlsberger, Joachim von Zanthier, Wilfried Wurth, and Ivan A. Vartanyants.	Phys. Rev. A 2020 101, 013820.
2019 (24)
Title	Authors	Reference	Thumbnail
Coherent X-ray Imaging of CO-Adsorption-Induced Structural Changes in Pt Nanoparticles: Implications for Catalysis. ACS	Manuel Abuin, Young Yong Kim, Henning Runge, Satishkumar Kulkarni, Simon Maier, Dmitry Dzhigaev, Sergey Lazarev, Luca Gelisio, Christoph Seitz, Marie-Ingrid Richard, Tao Zhou, Vedran Vonk, Thomas F. Keller, Ivan A. Vartanyants, Andreas Stierle.	Applied Nano Materials 2019, 2 (8) , 4818-4824.
On-chip crystallization for serial crystallography experiments and on-chip ligand-binding studies	Lieske, J., Cerv, M., Kreida, S., Komadina, D., Fischer, J., Barthelmess, M., Fischer, P., Pakendorf, T., Yefanov, O., Mariani, V., Seine, T., Ross, B. H., Crosas, E., Lorbeer, O., Burkhardt, A., Lane, T. J., Guenther, S., Bergtholdt, J., Schoen, S., Tornroth-Horsefield, S., Chapman, H. N. & Meents, A.	IUCrJ 6, 714-728.
Time-resolved serial femtosecond crystallography at the European XFEL.	Pandey, S., Bean, R., Sato, T. et al.	Nat Methods 17, 73–78 (2020). https://doi.org/10.1038/s41592-019-0628-z
Membrane protein megahertz crystallography at the European XFEL.	Gisriel, C., Coe, J., Letrun, R. et al.	Nat Commun 10, 5021 (2019). https://doi.org/10.1038/s41467-019-12955-3
Evaluation of serial crystallographic structure determination within megahertz pulse trains	O. Yefanov et al.	Structural Dynamics 6, 064702 (2019); https://doi.org/10.1063/1.5124387
1 kHz fixed-target serial crystallography using a multilayer monochromator and an integrating pixel detector	Tolstikova, A., Levantino, M., Yefanov, O., Hennicke, V., Fischer, P., Meyer, J., Mozzanica, A., Redford, S., Crosas, E., Opara, N. L., Barthelmess, M., Lieske, J., Oberthuer, D., Wator, E., Mohacsi, I., Wulff, M., Schmitt, B., Chapman, H. N. & Meents, A.	IUCrJ 6, 927-937
XGANDALF – extended gradient descent algorithm for lattice finding (*)	Gevorkov, Y., Yefanov, O., Barty, A., White, T. A., Mariani, V., Brehm, W., Tolstikova, A., Grigat, R.-R. & Chapman, H. N.	Acta Cryst. A75, 694-704
𝙷𝙴𝙿𝚏𝚒𝚝: a Code for the Combination of Indirect and Direct Constraints on High Energy Physics Models	Jorge de Blas, Debtosh Chowdhury, Marco Ciuchini, Antonio M. Coutinho, Otto Eberhardt, Marco Fedele, Enrico Franco, Giovanni Grilli di Cortona, Victor Miralles, Satoshi Mishima, Ayan Paul, Ana Penuelas, Maurizio Pierini, Laura Reina, Luca Silvestrini, Mauro Valli, Ryoutaro Watanabe, Norimi Yokozaki	https://arxiv.org/abs/1910.14012
Strain analysis from M-edge resonant inelastic X-ray scattering of nickel oxide films	P. S. Miedema,N. Thielemann-Kühn, I. Alonso Calafell, C. Schüßler-Langeheine, M. Beye	Phys. Chem. Chem. Phys., 2019, 21, 21596-21602
Demonstration of a compact plasma accelerator powered by laser-accelerated electron beams	T. Kurz, T. Heinemann, M. F. Gilljohann, Y. Y. Chang, J. P. Couperus Cabadağ, A. Debus, O. Kononenko, R. Pausch, S. Schöbel, R. W. Assmann, M. Bussmann, H. Ding, J. Götzfried, A. Köhler, G. Raj, S. Schindler, K. Steiniger, O. Zarini, S. Corde, A. Döpp, B. Hidding, S. Karsch, U. Schramm, A. Martinez de la Ossa, A. Irman	https://arxiv.org/abs/1909.06676
INTEGRATION OF AN XFELO AT THE EUROPEAN XFEL FACILITY	P. Rauer, I. Bahns, W. Hillert, J. Rossbach, W. Decking, Harald Sinn	http://accelconf.web.cern.ch/AccelConf/fel2019/papers/tup009.pdf
Intrinsic energy spread and bunch length growth in plasma-based accelerators due to betatron motion	Ferran Pousa, A., Martinez de la Ossa, A. & Assmann, R.W.	Sci Rep 9, 17690 (2019) doi:10.1038/s41598-019-53887-8
Megahertz single-particle imaging at the European XFEL	Egor Sobolev, Serguey Zolotarev, Klaus Giewekemeyer, Johan Bielecki, Kenta Okamoto, Hemanth K. N. Reddy, Jakob Andreasson, Kartik Ayyer, Imrich Barak, Sadia Bari, Anton Barty, Richard Bean, Sergey Bobkov, Henry N. Chapman, Grzegorz Chojnowski, Benedikt J. Daurer, Katerina Dörner, Tomas Ekeberg, Leonie Flückiger, Oxana Galzitskaya, Luca Gelisio, Steffen Hauf, Brenda G. Hogue, Daniel A. Horke, Ahmad Hosseinizadeh, Vyacheslav Ilyin, Chulho Jung, Chan Kim, Yoonhee Kim, Richard A. Kirian, Henry Kirkwood, Olena Kulyk, Romain Letrun, Duane Loh, Marc Messerschmidt, Kerstin Mühlig, Abbas Ourmazd, Natascha Raab, Andrei V. Rode, Max Rose, Adam Round, Takushi Sato, Robin Schubert, Peter Schwander, Jonas A. Sellberg, Marcin Sikorski, Alessandro Silenzi, Changyong Song, John C. H. Spence, Stephan Stern, Jolanta Sztuk-Dambietz, Anthon Teslyuk, Nicusor Timneanu, Martin Trebbin, Charlotte Uetrecht, Britta Weinhausen, Garth J. Williams, P Lourdu Xavier, Chen Xu, Ivan Vartanyants, Victor Lamzin, Adrian Mancuso, Filipe R. N. C. Maia	https://arxiv.org/abs/1912.10796
Full 3D+1 modelling of the tilted-pulse-front setups for single-cycle terahertz generation.	Wang, Lu & Kroh, Tobias & Matlis, Nicholas & Kärtner, Franz.	https://arxiv.org/abs/1908.09581
A load frame for in situ tomography at PETRA III	Julian Moosmann; D. C. Florian Wieland; Berit Zeller-Plumhoff; Silvia Galli; Diana Krüger; Alexey Ershov; Silke Lautner; Julian Sartori; Mason Dean; Sebastian Köhring; Hilmar Burmester; Thomas Dose; Niccoló Peruzzi; Ann Wennerberg; Regine Willumeit-Römer; Fabian Wilde; Philipp Heuser; Jörg U. Hammel; Felix Beckmann	http://dx.doi.org/10.1117/12.2530445
Plasma Lenses for Relativistic Laser Beams in Laser Wakefield Accelerators	Ming Zeng, Alberto Martinez de la Ossa, Kristjan Poder, Jens Osterhoff	https://arxiv.org/abs/1901.07974
Megapixels @ Megahertz -- The AGIPD High-Speed Cameras for the European XFEL	Ulrich Trunk, Aschkan Allahgholi, Julian Becker, Annette Delfs, Roberto Dinapoli, Peter Göttlicher, Heinz Graafsma, Dominic Greiffenberg, Helmut Hirsemann, Stefanie Jack, Alexander Klyuev, Hans Krüger, Manuela Kuhn, Torsten Laurus, Alessandro Marras, Davide Mezza, Aldo Mozzanica, Jennifer Poehlsen, Ofir Shefer Shalev, Igor Sheviakov, Bernd Schmitt, Jörn Schwandt, Xintian Shi, Sergej Smoljanin, Jiaguo Zhang, Manfred Zimmer	Nuclear Instruments and Methods in Physics Research Section A, V.942
The Karabo distributed control system	Steffen Hauf, Burkhard Heisen, et al.	J. Synchrotron Rad. (2019). 26
Compact Multistage Plasma-Based Accelerator Design for Correlated Energy Spread Compensation	A. Ferran Pousa, A. Martinez de la Ossa, R. Brinkmann, and R. W. Assmann	Phys. Rev. Lett. 123, 054801
Recovery of High-Energy Photoelectron Circular Dichroism through Fano Interference	G. Hartmann, M. Ilchen, Ph. Schmidt, C. Küstner-Wetekam, C. Ozga, F. Scholz, J. Buck, F. Trinter, J. Viefhaus, A. Ehresmann, M. S. Schöffler, A. Knie, and Ph. V. Demekhin	Phys. Rev. Lett. 123, 043202
A First Look on 3D Effects in Open Axion Haloscopes	Stefan Knirck, Jan Schütte-Engel, Alexander J. Millar, Javier Redondo, Olaf Reimann, Andreas Ringwald, Frank D. Steffen	https://arxiv.org/abs/1906.02677
Preparing for high-repetition rate hard x-ray self-seeding at the European X-ray Free Electron Laser: Challenges and opportunities	Shan Liu, Winfried Decking, Vitali Kocharyan, Evgeni Saldin, Svitozar Serkez, Roman Shayduk, Harald Sinn, and Gianluca Geloni	Phys. Rev. Accel. Beams 22, 060704
Hybrid LWFA–PWFA staging as a beam energy and brightness transformer: conceptual design and simulations	de la Ossa, A. Martinez; Assmann, R. W.; Bussmann, M.; Corde, S.; Cabadag, J. P. Couperus; Debus, A.; Doepp, A.; Pousa, A. Ferran; Gilljohann, M. F.; Heinemann, T.; Hidding, B.; Irman, A.; Karsch, S.; Kononenko, O.; Kurz, T.; Osterhoff, J.; Pausch, R.; Schoebel, S.; Schramm, U.	PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 377 (2151)
WAKE-T: A FAST PARTICLE TRACKING CODE FORPLASMA-BASED ACCELERATORS	A. Ferran Pousa†, R. Assmann, A. Martinez de la Ossa	10th Int. Partile Accelerator Conf.IPAC2019, Melbourne, AustraliaJACoW Publishing
2018
Title	Authors	Reference	Thumbnail
Megahertz serial crystallography	Max O. Wiedorn et al.	Nature Communications volume 9, Article number: 4025 (2018)
Electronic structure changes upon lithium intercalation into graphite – Insights from ex situ and operando x-ray Raman spectroscopy	Ulrike Boesenberg, Dimosthenis Sokaras, Dennis Nordlund, Tsu-Chien Weng, Evgeny Gorelov, Thomas J. Richardson, Robert Kostecki, Jordi Cabana	https://doi.org/10.1016/j.carbon.2018.11.031
Intrinsic Stabilization of the Drive Beam in Plasma-Wakefield Accelerators	A. Martinez de la Ossa, T. J. Mehrling, and J. Osterhoff	Phys. Rev. Lett. 121, 064803
Correlated Energy Spread Compensation in Multi-Stage Plasma-Based Accelerators	A. Ferran Pousa, A. Martinez de la Ossa, R. Brinkmann, R. W. Assmann	https://arxiv.org/abs/1811.07757
High efficiency terahertz generation in a multi-stage system	L. Wang, A. Fallahi, K. Ravi, and F. Kärtner	Opt. Express 26, 29744-29768 (2018)
Limitations on Energy Spread and Bunch Duration in Plasma-Based Accelerators Due to Betatron Motion	A. Ferran Pousa, R. W. Assmann, A. Martinez de la Ossa	https://arxiv.org/abs/1804.10966
The Adaptive Gain Integrating Pixel Detector at the European XFEL	A.Allahghol et al.	https://arxiv.org/pdf/1808.00256.pdf
Simulation studies for the MADMAX axion direct detection experiment	J. Schütte-Engel and the MADMAX collaboration	https://arxiv.org/abs/1811.00493
Synchronous acceleration with tapered dielectric-lined waveguides	F. Lemery, K. Floettmann, P. Piot, F. X. Kärtner, and R. Aßmann	Phys. Rev. Accel. Beam (2018)
Accurate modeling of the hose instability in plasma wakefield accelerators	T. J. Mehrling, C. Benedetti, C. B. Schroeder, A. Martinez de la Ossa, J. Osterhoff, E. Esarey, W. P. Leemans	Physics of Plasmas (2018)
Design strategies for single-cycle ultrafast electron guns	A.Fallahi and F. Kärtner	J.Physics B (2018)
Analytical model for the uncorrelated emittance evolution of externally injected beams in plasma-based accelerators	A.Aschikhin, T.J.Mehrling, A. Martinez de la Ossa, J.Osterhoff	NIMA (2018)
Beam quality preservation studies in a laser-plasma accelerator with external injection for EuPRAXIA	E.Svystun, R.W.Assmann, U.Dorda, A.Ferran Pousa, T.Heinemann, B.Marchetti, A.Martinez de la Ossa, P.A.Walker, M.K.Weikum, J.Zhu	NIMA (2018)
2017
Title	Authors	Reference	Thumbnail
X-ray spectroscopy on the active ion in laser crystals	P. S. Miedema, R. Mitzner, S. Ganschow, A. Föhlisch and M. Beye	Phys. Chem. Chem. Phys., 2017,19, 21800-21806
Optimizing density down-ramp injection for beam-driven plasma wakefield accelerators	A. Martinez de la Ossa, Z. Hu, M. J. V. Streeter, T. J. Mehrling, O. Kononenko, B. Sheeran, and J. Osterhoff	Phys. Rev. Accel. Beams (2017)
Data Analysis Support in Karabo at European XFEL	H. Fangohr, M. Beg, V. Bondar, D. Boukhelef, S. Brockhauser, C. Danilevski, W. Ehsan, S.G. Esenov, G. Flucke, G. Giovanetti, D. Goeries, S. Hauf, B.C. Heisen, D.G. Hickin, D. Khakhulin, A. Klimovskaia, M. Kuster, P.M. Lang, L.G. Maia, L. Mekinda, T. Michelat, A. Parenti, G. Previtali, H. Santos, A. Silenzi, J. Sztuk-Dambietz, J. Szuba, M. Teichmann, K. Weger, J. Wiggins, K. Wrona, C. Xu, S. Aplin, A. Barty, M. Kuhn, V. Mariani, T. Kluyver	https://doi.org/10.18429/JACoW-ICALEPCS2017-TUCPA01
An Adiabatic Phase-Matching Accelerator	F. Lemery, K. Floettmann, P. Piot, F. X. Kärtner, R. Aßmann	https://arxiv.org/pdf/1712.08403.pdf
Chirp Mitigation of Plasma-Accelerated Beams by a Modulated Plasma Density	R. Brinkmann, N. Delbos, I. Dornmair, M. Kirchen, R. Assmann, C. Behrens, K. Floettmann, J. Grebenyuk, M. Gross, S. Jalas, T. Mehrling, A. Martinez de la Ossa, J. Osterhoff, B. Schmidt, V. Wacker, and A. R. Maier	Phys. Rev. Lett. (2017)
Mitigation of the Hose Instability in Plasma-Wakefield Accelerators	T. J. Mehrling, R. A. Fonseca, A. Martinez de la Ossa, and J. Vieira	Phys. Rev. Lett. (2017)
2016 and earlier
Title	Authors	Reference	Thumbnail
Efficient numerical modelling of the emittance evolution of beams with finite energy spread in plasma wakefield accelerators	T.J.Mehrling, R.E.Robson, J-H.Erbe, J.Osterhoff	NIMA (2016)
The FLASHForward facility at DESY	A.Aschikhin, C.Behrens, S.Bohlen, J.Dale, N.Delbos, L.di Lucchio, E.Elsen, J.-H.Erbe, M.Felber, B.Foster, L.Goldberg, J.Grebenyuk, J.-N.Gruse, B.Hidding, ZhanghuH, S.Karstensen. A.Knetsch, O.Kononenko, V.Libov, K.Ludwig, A.R.Maier, A.Martinez de la Ossa, T.Mehrling, C.A.J.Palmer, F.Pannek, L.Schaper, H.Schlarb, B.Schmidt, S.Schreiber, J.-P.Schwinkendorf, H.Steel, M.Streeter, G.Tauscher, V.Wacker, S.Weichert, S.Wunderlich, J.Zemella, J.Osterhoff	NIMA (2015)
Wakefield-induced ionization injection in beam-driven plasma accelerators	A. Martinez de la Ossa, T. J. Mehrling, L. Schaper, M. J. V. Streeter, and J. Osterhoff	Physics of Plasmas (2015)
HiPACE: a quasi-static particle-in-cell code	T Mehrling, C Benedetti, C B Schroeder and J Osterhoff	Plasma Physics and Controlled Fusion, Volume 56, Number 8

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