Space Details:
Key
IS
Name
Computing
Description
Temporary dump from Confluence
Created by
schluenz (Jul 22, 2014 15:20)
Available Pages:
Computing @ DESY
Data privacy @ DESY scientific computing resources
How-to articles
AMD GPU
Cloning a confluence page tree
Creating a IT ticket best practices
Finding licenses
Finding resources
Finding Software on Maxwell
gitlab as a container registry
gitlab as a docker registry
gitlab as a singularity registry
Kerberos & AFS - Obtaining tickets and token without password
License Status
Comsol_Status
MATHEMATICA_Status
MATLAB_Status
Local Software installation
Mounting remote directories
Upload to Confluence using curl
Upload to DESYcloud using curl
Resources
BIRD
Prerequisites
DESY specifics / Quickstart
Submitting Jobs
Job Requirements (and failures)
Checking & Managing own Jobs
Checking Pool Status
Something went wrong
Migration from SGE to HTCondor
EL8 in Bird
Best Practices
Staging Files
WAN Reads
Tips & Tricks
get an interactive session on a batchnode
Individual job status and return codes
job environments
job run times and job bugs
Keep unsuccessful jobs in the queue or rerun them
large number of jobs
More sophisticated job submit file examples
ssh port forwarding or ssh proxy jump
Some jobs out of a cluster don't complete successfully
How much memory does my job need ?
Managing shell sessions with screen
Selecting Nodes by Benchmark Power
Condor Commands: Selections and Formating
Dynamic Conditions during job starts
GPU on NAF
Howto use directed acyclic Graphs (DAG) in BIRD
Interactive batchsession
Using FastX as NAF Remote Desktop
Group Specifics
Utilization Plots
A short WalkThrough
Authentication: Local, AFS, Grid
Command Quick Reference
ClassAds
Condor Job States
Condor inner details
Containers
Apptainer/Singularity
Apptainer/Singularity Cache and TMP Directories
Building Containers (Docker, Apptainer/Singularity)
Building a Apptainer/Singularity Container
Building Apptainer/Singularity Containers in Gitlab
Quick&Dirty build machine
Environment Variables
Isolation
Problems in Containers with 'No space left on device' due to limited TMP directories
Pulling/Bootstrapping Containers from other Repositories or Hubs with Apptainer/Singularity
Using Kerberos Tickets and AFS Tokens from Inside a Container
Singularity/Apptainer support in BIRD
How to use Grid resources in batch jobs
DEPRECATED: Mounting CERNBox/EOS locally
HTCondor FAQ and common problems
Python Bindings
Software on the NAF
Storage Resources and File System Layout
Links & Documentation
Condor Job Parameters and ClassAds
Quotas, priorities and fairshare - why are my jobs not starting immediately? ☹
Language settings in interactive/ssh sessions
ATLAS@NAF
Create and update Rucio Datasets from DUST
VisualStudioCode remote sessions on Workgroup Server
Maxwell
NAF - National Analysis Facility
CERN AFS disconnection test 2021 Oct.25-Nov.01
User Observations
DUST Usage & Lifecycle Policy
Experiment pages and docu
Getting a NAF account
Getting support and FAQ
Jupyter on NAF
NAF Batch Farm and Batch Jobs
NAF - Grid CEs
NAF Login, WGS and remote Desktop
News
2019 August 07: ATLAS storage maintenance
NUC: NAF Users Committee
References: Articles, Papers, Proceedings
Reporting Storage Issues
Security @ NAF
Storage on and around the NAF
Grid & Tier-II
Cluster Venn Diagram
Software
Alphabetical List of Packages
Integrated Applications
Amira-Avizo
Ansys
Lumerical
Parallel Ansys on Maxwell
Comsol Multiphysics
Comsol Model Manager
Comsol storage locations
Parallel COMSOL on Maxwell
IDL
IDL installation
IDL New License Server
Maple
Mathematica
Mathematica License Server
Parallel Mathematica on Maxwell
MATLAB
Matlab license servers
Matlab Mac OSX Installation
Matlab Mac OSX Installation - Using the Lite Installer
Matlab Windows installation
Octave
Origin
Paraview
R
RooT
Scilab
Mathematical Libraries
fftw
gmp
gsl
lapack
metis
mumps
NLopt
openblas
petsc
Miscellaneous Software
FastX2
FastX3
Oracle
Oracle under Linux
TeX
Programming
Compiler
clang
GCC
Intel
NAG
NVHPC
PGI
cuda
devtoolset
JetBrains
Julia
MPI
compat-openmpi
mpich
mvapich
openmpi
openmpi-intel
Profiling
gprof
OProfile
Python
Belle II Re-calibration on the NAF