Created by Frank Schluenzen, last modified on Jan 25, 2022 22:48

Summary

MOSFLM can process diffraction images from a wide range of detectors and produces, as output, an MTZ file of reflection indices with their intensities and standard deviations (and other parameters). This MTZ file is passed onto other programs of the CCP4 program suite (POINTLESS, SORTMTZ, AIMLESS, CTRUNCATE) for further data reduction.The MOSFLM program was originally written to process data collected on film. It was then modified to process data collected using the image plate detector developed at the EMBL outstation in Hamburg by Jules Hendrix and Arno Lentfer, and the name was changed to ipmosflm. This is the current version of the program, which will also process data from CCD and pixel detectors.

Using  mosflm/imosflm

 To initialize the environment use the module command:

xwhich mosflm

 Provided by module(s)
  ... module load maxwell crystfel/0.10.0                      which mosflm: /software/crystfel/0.10.0/bin/mosflm 
  ... module load maxwell crystfel/0.8.0                       which mosflm: /software/crystfel/0.8.0/bin/mosflm 
  ... module load maxwell crystfel/0.9.1                       which mosflm: /software/crystfel/0.9.1/bin/mosflm 
  ... module load maxwell crystfel/0.7.0                       which mosflm: /software/crystfel/0.8.0/bin/mosflm 
  ... module load maxwell crystfel/0.9.0                       which mosflm: /software/crystfel/0.9.0/bin/mosflm 
  ... module load maxwell crystfel/0-devel                     which mosflm: /software/crystfel/devel/bin/mosflm 
  ... module load md                                           which mosflm: /opt/xray/bin/mosflm 
  ... module load crystfel                                     which mosflm: /opt/crystfel/bin/mosflm 
  ... module load xray                                         which mosflm: /opt/xray/bin/mosflm 
  ... module load xray                                         which mosflm: /opt/xray/imosflm/bin/mosflm 
  ... module load tools/crystfel                               which mosflm: /opt/crystfel/bin/mosflm 
  ... module load ccp4/6.4                                     which mosflm: /opt/xray/bin/mosflm 
  ... module load ccp4/6.5                                     which mosflm: /opt/xray/bin/mosflm 
  ... module load ccp4/7.0                                     which mosflm: /opt/xray/bin/mosflm 
  ... module load ccp4/7.1                                     which mosflm: /opt/xray/bin/mosflm 

 Documentation: https://confluence.desy.de/display/MXW/mosflm

 xwhich imosflm

 Provided by module(s)
  ... module load maxwell crystfel/0.9.1                       which imosflm: /software/crystfel/0.9.1/bin/imosflm 
  ... module load maxwell crystfel/0.9.0                       which imosflm: /software/crystfel/0.9.0/bin/imosflm 
  ... module load xray                                         which imosflm: /opt/xray/ccp4-7.0/bin/imosflm 
  ... module load xray                                         which imosflm: /opt/xray/imosflm/src/imosflm 
  ... module load ccp4/6.5                                     which imosflm: /opt/xray/ccp4-6.5/bin/imosflm 
  ... module load ccp4/7.0                                     which imosflm: /opt/xray/ccp4-7.0/bin/imosflm 
  ... module load ccp4/7.1                                     which imosflm: /opt/xray/ccp4-7.1/bin/imosflm 

 URL:           https://www.mrc-lmb.cam.ac.uk/mosflm/imosflm/ver722/introduction.html
 Manual:        https://www.mrc-lmb.cam.ac.uk/mosflm/imosflm/ver722/documentation.html
 License:       unknown