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Title: Software  
Author: Wolfgang Lugmayr Apr 11, 2019 11:46
Last Changed by: Wolfgang Lugmayr Oct 19, 2020 14:37
Tiny Link: (useful for email) https://confluence.desy.de/x/4YmmBw
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Hierarchy
Parent Page
    Home page: CSSB CryoEM Software
Children (11)
    Page: cisTEM
    Page: crYOLO
    Page: cryoSPARC
    Page: IMOD/PEET
    Page: localrec
    Page: Nextflow
    Page: ProTomo
    Page: Relion3
    Page: Scipion3
    Page: SPHIRE
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Outgoing Links
External Links (37)
    sphire.mpg.de/wiki/doku.php?id=janni
    https://github.com/asarnow/pyem/blob/master/README.md
    https://github.com/StructuralBiology-ICLMedicine/SIDESPLITT…
    https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/web/tu…
    https://github.com/tbepler/topaz
    https://focus.c-cina.unibas.ch/
    emgweb.nysbc.org/topaz.html
    https://github.com/haddocking/powerfit
    https://www.ccpem.ac.uk/
    sphire.mpg.de/wiki/doku.php?id=auto_2d_class_selection
    https://git.embl.de/jakobi/LocScale/-/wikis/home
    https://github.com/PrincetonUniversity/APPLEpicker-python
    https://github.com/lmb-freiburg/Unet-Segmentation/
    https://diamondlightsource.github.io/SuRVoS/
    https://github.com/rsanchezgarc/micrograph_cleaner_em
    https://emg.nysbc.org/redmine/projects/phoelix
    https://github.com/zhonge/cryodrgn
    https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
    https://github.com/anmartinezs/pyseg_system
    https://github.com/MPI-Dortmund/transphire/wiki
    www.opic.ox.ac.uk/wiki/index.php/Scripts
    https://github.com/cianfrocco-lab/Automatic-cryoEM-pr
    https://www.nextflow.io/
    https://github.com/cctbx/cctbx_project
    www.sachse.embl.de/emspring/
    https://github.com/DustinMorado/EPU_group_AFIS
    https://github.com/kylelmorris/bashEM
    https://github.com/fraser-lab/EMRinger
    https://github.com/bHimes/emClarity/wiki
    https://github.com/nysbc/Anisotropy
    https://thuem.github.io/THUNDER/
    https://download.imagescience.de/index.html
    https://pypi.org/project/relion-yolo-it/
    https://blake.bcm.edu/emanwiki/EMAN2
    https://git.embl.de/mbeckers/FDRthresholding
    https://github.com/rsanchezgarc/deepEMhancer
    https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/web/tu…
CSSB CryoEM Software (8)     Page: Scipion2
    Page: crYOLO
    Page: cryoSPARC
    Page: cisTEM
    Page: SPHIRE
    Page: ProTomo
    Page: Relion3
    Page: localrec