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If you receive a SyntaxError when launching jobs with sbatch_analyse.py, you may have forgotten to set up the environment. Try the following and then launch the jobs again:
Code Block language py
module load anaconda/3
- When trying to run XFEL jobs, you receive an error that the run_list is not specified, although it is. This is a misleading error message and should be fixed. At the moment, XFEL mode requires that input_dir, output_dir, type, and run_list all be specified on the command line, and will not be taken from the yaml file. If one of these is missing, it throws the error with the message that the run_list is missing.